Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4302

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12669 and 12670 are separated by 193 nucleotides mRNA_4301: 12669 - Hypothetical Protein, at 1,840,764 to 1,841,675 12669 mRNA_4302: 12670 - K07819 B3GALT1 beta-1,3-galactosyltransferase 1, at 1,841,869 to 1,845,358 12670

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,841,128 + 12669 mRNA_4301 0.40 +0.2
1,841,250 + 12669 mRNA_4301 0.53 -1.2
1,841,338 + 12669 mRNA_4301 0.63 +0.2
1,841,614 - +0.9
1,841,623 + -0.5
1,842,207 + +0.6
1,842,510 - 12670 mRNA_4302 0.18 -0.6
1,842,820 - 12670 mRNA_4302 0.27 +0.6
1,842,952 + 12670 mRNA_4302 0.31 -0.2
1,843,005 - 12670 mRNA_4302 0.33 -0.3
1,843,517 - 12670 mRNA_4302 0.47 +0.2
1,843,528 + 12670 mRNA_4302 0.48 -0.6
1,843,708 - 12670 mRNA_4302 0.53 +0.0
1,843,980 - 12670 mRNA_4302 0.60 +0.3
1,843,995 + 12670 mRNA_4302 0.61 +0.8
1,844,116 + 12670 mRNA_4302 0.64 -0.1
1,844,220 + 12670 mRNA_4302 0.67 +0.7
1,844,224 - 12670 mRNA_4302 0.67 -0.5
1,844,401 + 12670 mRNA_4302 0.73 +0.4
1,844,433 + 12670 mRNA_4302 0.73 -0.3
1,844,445 - 12670 mRNA_4302 0.74 -1.1
1,844,447 + 12670 mRNA_4302 0.74 +1.1
1,844,577 - 12670 mRNA_4302 0.78 -0.4
1,844,580 - 12670 mRNA_4302 0.78 +0.4
1,845,486 + +1.2
1,846,062 + +0.7

Or see this region's nucleotide sequence