Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4324

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12691 and 12692 are separated by 281 nucleotides12692 and 12693 are separated by 764 nucleotides mRNA_4323: 12691 - KOG1198 Zinc-binding oxidoreductase, at 1,908,331 to 1,909,628 12691 mRNA_4324: 12692 - K18754 LIN28 protein lin-28, at 1,909,910 to 1,911,534 12692 mRNA_4325: 12693 - K03231 EEF1A elongation factor 1-alpha, at 1,912,299 to 1,914,440 12693

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,909,462 - 12691 mRNA_4323 0.87 +0.1
1,910,033 + +0.4
1,910,167 + 12692 mRNA_4324 0.16 +0.1
1,910,422 + 12692 mRNA_4324 0.32 +0.3
1,911,037 + 12692 mRNA_4324 0.69 +1.0
1,912,138 + -0.9
1,912,261 - -0.2
1,912,311 - +0.6

Or see this region's nucleotide sequence