Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4325

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12692 and 12693 are separated by 764 nucleotides12693 and 12694 are separated by 451 nucleotides mRNA_4324: 12692 - K18754 LIN28 protein lin-28, at 1,909,910 to 1,911,534 12692 mRNA_4325: 12693 - K03231 EEF1A elongation factor 1-alpha, at 1,912,299 to 1,914,440 12693 mRNA_4326: 12694 - Hypothetical Protein, at 1,914,892 to 1,915,200 12694

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,912,138 + -0.9
1,912,261 - -0.2
1,912,311 - +0.6
1,914,772 - -0.3
1,914,775 + +0.2
1,914,787 - +0.7
1,914,797 - +0.0
1,914,942 - 12694 mRNA_4326 0.16 -0.0
1,914,945 - 12694 mRNA_4326 0.17 +0.2
1,914,946 + 12694 mRNA_4326 0.17 +1.1
1,914,955 + 12694 mRNA_4326 0.20 +0.4
1,914,955 + 12694 mRNA_4326 0.20 +1.3
1,914,971 - 12694 mRNA_4326 0.26 +0.3
1,915,067 - 12694 mRNA_4326 0.57 +0.5
1,915,111 + 12694 mRNA_4326 0.71 -1.1
1,915,232 - +0.8

Or see this region's nucleotide sequence