Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4347

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12714 and 12715 are separated by 496 nucleotides12715 and 12716 are separated by 442 nucleotides mRNA_4346: 12714 - K18754 LIN28 protein lin-28, at 1,962,834 to 1,965,398 12714 mRNA_4347: 12715 - K03386 PRDX2_4, ahpC peroxiredoxin (alkyl hydroperoxide reductase subunit C), at 1,965,895 to 1,967,093 12715 mRNA_4348: 12716 - KOG2265 Nuclear distribution protein NUDC, at 1,967,536 to 1,968,862 12716

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,965,622 - +0.1
1,965,647 - +0.2
1,965,658 + +0.4
1,965,941 - +0.4
1,965,949 + -0.0
1,966,071 + 12715 mRNA_4347 0.15 +0.0
1,966,144 - 12715 mRNA_4347 0.21 +0.2
1,966,948 - 12715 mRNA_4347 0.88 +0.3
1,966,961 - 12715 mRNA_4347 0.89 +2.0
1,967,102 - +0.6
1,967,103 + +1.1
1,967,234 + +0.1
1,967,246 - +0.1
1,967,254 - +2.0
1,967,260 - +0.7
1,967,260 + +0.6
1,967,267 + +0.1
1,967,273 + -0.3
1,967,273 + +0.5
1,967,274 + +1.7
1,967,278 + +0.2
1,967,328 - +0.5
1,967,352 + +0.6
1,967,361 + +0.6
1,967,367 - +0.5
1,967,368 + +0.2
1,967,372 + +0.0
1,967,375 - +0.2
1,967,376 + +0.4
1,967,380 + +0.1
1,967,384 - +0.8
1,967,386 - +0.5
1,967,387 + -0.4
1,967,392 + +0.1
1,967,393 + +0.2
1,967,399 + +0.6
1,967,402 - +0.3
1,967,406 + -1.2
1,967,408 - -0.4

Or see this region's nucleotide sequence