Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4359

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12727 and 12728 are separated by 227 nucleotides mRNA_4359: 12727 - Hypothetical Protein, at 194 to 736 12727 mRNA_4360: 12728 - Hypothetical Protein, at 964 to 3,087 12728

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1 + +1.2
34 + +0.2
36 + +1.5
40 + +0.7
106 - +0.7
115 + +0.5
156 - +0.7
162 + +0.1
170 + +0.5
318 + 12727 mRNA_4359 0.23 +0.7
397 + 12727 mRNA_4359 0.37 +1.4
440 + 12727 mRNA_4359 0.45 +0.2
450 + 12727 mRNA_4359 0.47 +0.2
491 + 12727 mRNA_4359 0.55 +0.9
494 - 12727 mRNA_4359 0.55 +0.4
500 - 12727 mRNA_4359 0.56 +0.2
513 + 12727 mRNA_4359 0.59 -0.1
527 - 12727 mRNA_4359 0.61 +0.7
535 + 12727 mRNA_4359 0.63 +0.3
537 - 12727 mRNA_4359 0.63 +0.3
573 - 12727 mRNA_4359 0.70 +0.9
575 - 12727 mRNA_4359 0.70 +1.2
575 - 12727 mRNA_4359 0.70 +0.0
585 + 12727 mRNA_4359 0.72 +0.3
627 - 12727 mRNA_4359 0.80 +1.0
629 + 12727 mRNA_4359 0.80 +0.7
632 + 12727 mRNA_4359 0.81 -0.3
655 + 12727 mRNA_4359 0.85 +0.8
657 - 12727 mRNA_4359 0.85 +0.0
666 + 12727 mRNA_4359 0.87 +0.2
837 + -0.5
866 + +1.1
966 + -0.2
1,080 + -0.6
1,091 + +0.2
1,091 + +0.4
1,092 + +0.2
1,119 + -0.6
1,180 - 12728 mRNA_4360 0.10 -0.4
1,185 - 12728 mRNA_4360 0.10 +0.3
1,186 + 12728 mRNA_4360 0.10 -0.5
1,262 + 12728 mRNA_4360 0.14 +0.5
1,362 + 12728 mRNA_4360 0.19 +0.6
1,365 - 12728 mRNA_4360 0.19 +0.3
1,368 - 12728 mRNA_4360 0.19 -0.1
1,381 + 12728 mRNA_4360 0.20 +1.6
1,539 - 12728 mRNA_4360 0.27 +1.1
1,589 + 12728 mRNA_4360 0.29 -0.2
1,630 + 12728 mRNA_4360 0.31 -0.1
1,688 + 12728 mRNA_4360 0.34 +0.5
1,692 + 12728 mRNA_4360 0.34 +1.2
1,698 - 12728 mRNA_4360 0.35 +0.1
1,699 + 12728 mRNA_4360 0.35 +0.6

Or see this region's nucleotide sequence