Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4366

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12733 and 12734 are separated by 354 nucleotides12734 and 12735 are separated by 78 nucleotides mRNA_4365: 12733 - HMMPfam-Zinc finger, C3HC4 type (RING finger)-PF13920, at 18,950 to 21,856 12733 mRNA_4366: 12734 - K11650 SMARCD SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D, at 22,211 to 24,480 12734 mRNA_4367: 12735 - K08856 STK16 serine/threonine kinase 16, at 24,559 to 26,572 12735

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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21,352 + 12733 mRNA_4365 0.83 +2.1
21,352 - 12733 mRNA_4365 0.83 +0.5
21,359 - 12733 mRNA_4365 0.83 -0.6
21,478 + 12733 mRNA_4365 0.87 -0.3
21,496 - 12733 mRNA_4365 0.88 -0.5
21,632 + +0.4
21,651 + +0.9
21,774 + +0.2
21,778 - +0.4
21,810 - +0.3
21,934 - +0.6
21,956 + +0.9
22,068 - +0.3
22,071 - -0.2
22,077 - +0.3
22,080 - +0.4
22,099 + +0.3
22,104 + -0.2
22,104 + -0.2
22,231 + +1.9
22,243 + +0.8
24,389 + -0.1
24,522 - +0.6
24,750 - +0.8
24,869 + 12735 mRNA_4367 0.15 +0.7
24,884 + 12735 mRNA_4367 0.16 +0.7
24,982 + 12735 mRNA_4367 0.21 -1.3
25,125 + 12735 mRNA_4367 0.28 -1.0
25,231 - 12735 mRNA_4367 0.33 +0.7

Or see this region's nucleotide sequence