Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4374

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12741 and 12742 are separated by 141 nucleotides12742 and 12743 are separated by 316 nucleotides mRNA_4373: 12741 - SUPERFAMILY--SSF52058, at 41,270 to 42,990 12741 mRNA_4374: 12742 - K00232 E1.3.3.6, ACOX1, ACOX3 acyl-CoA oxidase, at 43,132 to 46,033 12742 mRNA_4375: 12743 - K14209 SLC36A, PAT solute carrier family 36 (proton-coupled amino acid transporter), at 46,350 to 49,394 12743

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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42,232 + 12741 mRNA_4373 0.56 +0.5
42,540 + 12741 mRNA_4373 0.74 +1.0
42,735 + 12741 mRNA_4373 0.85 -0.4
42,790 + 12741 mRNA_4373 0.88 -2.0
42,864 + +1.5
42,973 + -0.6
43,033 + +0.7
43,033 + +1.0
43,160 + +0.2
43,162 - -0.9
43,311 + +0.1
43,322 - +0.0
43,373 - +0.7
43,382 + +0.3
43,425 + 12742 mRNA_4374 0.10 -0.8
43,437 + 12742 mRNA_4374 0.11 +0.3
43,541 - 12742 mRNA_4374 0.14 -0.4
43,542 - 12742 mRNA_4374 0.14 +0.4
43,720 + 12742 mRNA_4374 0.20 -0.9
43,871 + 12742 mRNA_4374 0.25 +0.6
43,896 - 12742 mRNA_4374 0.26 +0.9
43,905 - 12742 mRNA_4374 0.27 +0.8
43,943 - 12742 mRNA_4374 0.28 +1.1
44,151 + 12742 mRNA_4374 0.35 -0.8
44,207 - 12742 mRNA_4374 0.37 +0.0
44,277 + 12742 mRNA_4374 0.39 -1.3
44,319 - 12742 mRNA_4374 0.41 +0.0
44,401 - 12742 mRNA_4374 0.44 -0.2
44,402 + 12742 mRNA_4374 0.44 -1.4
44,727 - 12742 mRNA_4374 0.55 +0.7
44,761 - 12742 mRNA_4374 0.56 -0.7
44,763 - 12742 mRNA_4374 0.56 -0.5
44,781 - 12742 mRNA_4374 0.57 +0.2
44,838 - 12742 mRNA_4374 0.59 +0.9
44,847 - 12742 mRNA_4374 0.59 -1.5
44,873 - 12742 mRNA_4374 0.60 +0.2
44,883 - 12742 mRNA_4374 0.60 +0.1
44,895 + 12742 mRNA_4374 0.61 -0.2
44,910 + 12742 mRNA_4374 0.61 +0.5
45,168 - 12742 mRNA_4374 0.70 +0.7
45,173 - 12742 mRNA_4374 0.70 +0.1
45,189 + 12742 mRNA_4374 0.71 +1.1
45,445 + 12742 mRNA_4374 0.80 +0.2
45,452 - 12742 mRNA_4374 0.80 +0.0
45,462 + 12742 mRNA_4374 0.80 +0.7
45,471 - 12742 mRNA_4374 0.81 +0.6
45,741 - 12742 mRNA_4374 0.90 +0.3
45,744 - -0.9
45,744 + +0.9
45,773 + +0.5
45,906 + -0.3
45,912 - +0.1
45,918 - +0.6
45,996 - +1.1
46,018 + -0.7
46,034 - +2.1
46,055 - -1.4
46,059 + +0.3
46,060 + -0.3
46,074 + +0.0
46,155 - +1.3
46,186 + -1.5
46,189 - +0.3
46,191 + -0.0
46,192 + -0.3
46,195 - +1.2
46,201 + +0.3
46,202 + +0.7
46,203 - -0.1
46,205 + +0.0
46,208 - +0.4
46,208 - +0.3
46,217 + +0.4
46,217 + +0.3
46,219 - +0.1
46,227 - +1.0
46,230 + +2.2
46,233 + +0.6
46,235 + +1.3
46,237 - -0.8
46,237 + +1.4
46,287 + +0.6
46,334 + -0.0
46,342 - +0.1
46,346 + +0.6
46,355 + -0.2
46,355 - +0.4
46,367 + +1.1
46,367 + +0.5
46,367 - -1.7
46,368 - +1.6
46,369 - -0.4
46,383 - +0.2
46,384 + +0.8
46,387 + -0.3
46,623 - +0.3
46,759 + 12743 mRNA_4375 0.13 +0.6
46,940 - 12743 mRNA_4375 0.19 +0.9
46,947 - 12743 mRNA_4375 0.20 +0.2
46,956 + 12743 mRNA_4375 0.20 +0.1
46,976 + 12743 mRNA_4375 0.21 -0.3

Or see this region's nucleotide sequence