Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4465

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12833 and 12834 are separated by 403 nucleotides mRNA_4465: 12833 - Hypothetical Protein, at 246,095 to 248,663 12833 mRNA_4466: 12834 - Hypothetical Protein, at 249,067 to 250,434 12834

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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245,126 - +0.4
245,176 + -0.0
245,234 - -0.0
245,322 - +0.2
245,432 + -0.3
245,442 - +0.8
245,462 - -0.5
245,545 + +0.6
245,733 - +0.9
245,740 - +0.5
245,756 - -0.1
246,150 - -0.2
246,542 + 12833 mRNA_4465 0.17 -0.2
246,605 + 12833 mRNA_4465 0.20 +0.9
246,653 + 12833 mRNA_4465 0.22 +0.6
246,751 + 12833 mRNA_4465 0.26 +0.1
246,770 - 12833 mRNA_4465 0.26 +0.9
246,939 + 12833 mRNA_4465 0.33 +0.4
247,251 + 12833 mRNA_4465 0.45 -1.0
247,373 + 12833 mRNA_4465 0.50 +0.9
247,683 + 12833 mRNA_4465 0.62 +0.5
247,684 - 12833 mRNA_4465 0.62 +0.1
247,765 - 12833 mRNA_4465 0.65 -0.1
247,789 - 12833 mRNA_4465 0.66 +0.6
247,852 + 12833 mRNA_4465 0.68 +0.3
248,238 + 12833 mRNA_4465 0.83 +1.2
248,277 + 12833 mRNA_4465 0.85 +0.6
248,847 - +0.4
249,119 - +1.1
249,149 - -0.3
249,152 - +0.7
249,609 + 12834 mRNA_4466 0.40 -0.1

Or see this region's nucleotide sequence