Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4470

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12837 and 12838 are separated by 475 nucleotides mRNA_4469: 12837 - Hypothetical Protein, at 253,897 to 255,507 12837 mRNA_4470: 12838 - K05292 PIGT phosphatidylinositol glycan, class T, at 255,983 to 257,580 12838

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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254,994 + 12837 mRNA_4469 0.68 -0.0
255,188 + 12837 mRNA_4469 0.80 +0.1
255,258 - 12837 mRNA_4469 0.84 -0.8
255,259 - 12837 mRNA_4469 0.85 +1.3
255,265 - 12837 mRNA_4469 0.85 +0.3
255,283 + 12837 mRNA_4469 0.86 -0.7
255,431 - -1.4
255,436 - -0.1
255,436 + -0.1
255,449 - -0.1
255,449 - +0.1
255,592 - +0.2
255,676 + -0.3
255,721 + -0.1
255,901 + +0.6
255,902 + -0.9
255,907 + +0.0
256,022 - +1.5
258,043 - -0.7
258,058 - +0.1
258,061 - +0.4
258,174 + +0.5
258,180 + +1.0
258,230 + +0.0
258,253 - +0.6
258,396 - +0.1

Or see this region's nucleotide sequence