Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4477

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12844 and 12845 are separated by 570 nucleotides12845 and 12846 are separated by 511 nucleotides mRNA_4476: 12844 - HMMPfam-Domain of unknown function (DUF543)-PF04418, at 274,456 to 275,559 12844 mRNA_4477: 12845 - HMMPfam-CFEM domain-PF05730,SMART--SM00747, at 276,130 to 277,462 12845 mRNA_4478: 12846 - K01537 E3.6.3.8 Ca2+-transporting ATPase, at 277,974 to 281,759 12846

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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275,150 + 12844 mRNA_4476 0.63 +0.6
275,430 + 12844 mRNA_4476 0.88 +0.2
275,440 - 12844 mRNA_4476 0.89 +0.2
275,544 - +0.5
275,593 + -1.6
275,601 + -0.8
275,601 - +0.8
275,920 - +1.4
276,563 - 12845 mRNA_4477 0.32 +0.7
276,739 + 12845 mRNA_4477 0.46 +0.3
276,868 - 12845 mRNA_4477 0.55 +0.2
277,455 + -0.7
277,503 - -0.3
277,589 - -0.2
277,621 - +0.5
277,633 - +1.4
277,636 - +0.9
277,643 - -0.1
277,700 + +1.7
277,702 + +0.6
277,702 + +0.4
277,957 - -0.4
278,259 + +0.7

Or see this region's nucleotide sequence