Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4497

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12865 and 12866 are separated by 542 nucleotides mRNA_4497: 12865 - SUPERFAMILY--SSF81383, at 320,556 to 322,046 12865 mRNA_4498: 12866 - Hypothetical Protein, at 322,589 to 323,741 12866

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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319,751 + -0.9
319,773 + -0.1
319,775 - +0.4
320,103 + +0.5
320,123 - +0.7
320,124 + -0.0
320,124 + +0.5
320,127 - +0.5
320,297 - -0.3
320,384 - +0.3
320,390 + +0.4
320,410 - +0.1
320,549 - -0.3
320,661 + -3.5
320,874 + 12865 mRNA_4497 0.21 +0.0
320,974 - 12865 mRNA_4497 0.28 -0.9
320,978 + 12865 mRNA_4497 0.28 -0.6
321,120 - 12865 mRNA_4497 0.38 +1.6
321,180 - 12865 mRNA_4497 0.42 -0.4
321,182 - 12865 mRNA_4497 0.42 +0.6
321,250 + 12865 mRNA_4497 0.47 +0.7
321,326 - 12865 mRNA_4497 0.52 -0.5
321,447 - 12865 mRNA_4497 0.60 +0.7
321,590 - 12865 mRNA_4497 0.69 +0.3
321,880 + 12865 mRNA_4497 0.89 +0.0
321,914 - -0.3
322,028 - +0.7
322,035 - +0.7
322,050 + +0.9
322,103 - +0.4
322,123 + -0.1
322,423 - +1.5
322,674 + -0.6

Or see this region's nucleotide sequence