Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4500

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12867 and 12868 are separated by 210 nucleotides12868 and 12869 are separated by 172 nucleotides mRNA_4499: 12867 - K01968 E6.4.1.4A 3-methylcrotonyl-CoA carboxylase alpha subunit, at 323,884 to 327,513 12867 mRNA_4500: 12868 - K14304 NUP85 nuclear pore complex protein Nup85, at 327,724 to 330,564 12868 mRNA_4501: 12869 - Hypothetical Protein, at 330,737 to 332,545 12869

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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327,285 - +1.2
327,422 + +0.1
327,434 - +0.3
327,437 + +0.3
327,447 + -0.7
327,674 + +1.2
327,798 - +0.3
328,363 - 12868 mRNA_4500 0.22 +0.0
328,485 - 12868 mRNA_4500 0.27 -0.2
328,649 + 12868 mRNA_4500 0.33 -1.2
329,114 + 12868 mRNA_4500 0.49 +0.0
329,220 - 12868 mRNA_4500 0.53 -0.1
329,291 - 12868 mRNA_4500 0.55 +0.6
329,505 + 12868 mRNA_4500 0.63 +1.5
329,512 + 12868 mRNA_4500 0.63 -0.8
329,557 - 12868 mRNA_4500 0.65 +1.6
329,729 - 12868 mRNA_4500 0.71 +0.4
329,780 - 12868 mRNA_4500 0.72 +2.4
329,795 - 12868 mRNA_4500 0.73 -0.2
330,197 - 12868 mRNA_4500 0.87 -0.3
330,361 + +0.7
330,364 - +0.9
330,476 - +0.4
330,512 + +1.2
330,523 + +0.5
330,644 + +1.1
330,655 - +0.0
330,674 + +0.3
331,045 + 12869 mRNA_4501 0.17 +0.2
331,223 - 12869 mRNA_4501 0.27 +0.8

Or see this region's nucleotide sequence