Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4538

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12905 and 12906 are separated by 139 nucleotides12906 and 12907 are separated by 80 nucleotides mRNA_4537: 12905 - KOG0472 Leucine-rich repeat protein, at 406,318 to 409,422 12905 mRNA_4538: 12906 - KOG2112 Lysophospholipase, at 409,562 to 410,663 12906 mRNA_4539: 12907 - HMMPfam-DNA polymerase subunit Cdc27-PF09507, at 410,744 to 412,303 12907

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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408,683 + 12905 mRNA_4537 0.76 +1.3
408,686 - 12905 mRNA_4537 0.76 +1.2
408,879 + 12905 mRNA_4537 0.82 -0.2
409,202 - -1.0
409,398 - +0.6
410,546 + 12906 mRNA_4538 0.89 +1.8
410,552 + 12906 mRNA_4538 0.90 +0.0
410,552 - 12906 mRNA_4538 0.90 +0.1
410,713 + +0.4
410,719 - +0.6
410,723 + +0.7

Or see this region's nucleotide sequence