Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4541

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12908 and 12909 are separated by 873 nucleotides mRNA_4540: 12908 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 412,485 to 416,287 12908 mRNA_4541: 12909 - K03457 TC.NCS1 nucleobase-cation symporter-1, NCS1 family, at 417,161 to 419,747 12909

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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416,246 - +0.0
416,272 - -0.2
416,273 + -0.0
416,284 + +0.2
416,394 - -0.1
416,420 + -0.3
416,428 + +0.1
416,548 - -0.7
416,572 - +0.4
416,733 - -0.3
416,756 - -0.5
416,859 - +1.2
416,868 - +0.1
416,877 + -0.5
416,910 - +0.4
416,914 - +0.4
416,915 + -0.1
416,916 + +0.2
417,561 - 12909 mRNA_4541 0.15 +1.0
417,618 + 12909 mRNA_4541 0.18 +0.4
417,795 - 12909 mRNA_4541 0.25 +1.1
418,091 + 12909 mRNA_4541 0.36 +0.4
418,356 - 12909 mRNA_4541 0.46 +0.4
418,515 + 12909 mRNA_4541 0.52 +1.0
418,655 + 12909 mRNA_4541 0.58 +0.5
418,931 - 12909 mRNA_4541 0.68 +0.6
420,106 + +1.1
420,146 + +0.3
420,262 - +1.1
420,263 + -0.1
420,263 - -0.1
420,263 + +0.9
420,277 - +0.3
420,299 + +0.1
420,377 + +0.2

Or see this region's nucleotide sequence