Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4550

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12917 and 12918 are separated by 93 nucleotides12918 and 12919 are separated by 231 nucleotides mRNA_4549: 12917 - HMMPfam-Protein of unknown function (DUF1769)-PF08588, at 435,952 to 437,989 12917 mRNA_4550: 12918 - K16186 RRAGC_D Ras-related GTP-binding protein C/D, at 438,083 to 440,152 12918 mRNA_4551: 12919 - HMMPfam-Whi5 like-PF08528, at 440,384 to 442,291 12919

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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437,409 - 12917 mRNA_4549 0.71 +1.5
437,741 + 12917 mRNA_4549 0.88 +0.4
438,385 - 12918 mRNA_4550 0.15 +0.2
438,386 + 12918 mRNA_4550 0.15 +1.1
438,387 - 12918 mRNA_4550 0.15 -0.3
438,398 + 12918 mRNA_4550 0.15 +0.9
438,425 + 12918 mRNA_4550 0.17 +0.4
439,153 + 12918 mRNA_4550 0.52 +0.9
440,153 + +0.5
440,561 + +1.4
440,574 - +1.0
440,891 - 12919 mRNA_4551 0.27 -0.0

Or see this region's nucleotide sequence