Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4575

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12942 and 12943 are separated by 271 nucleotides12943 and 12944 are separated by 287 nucleotides mRNA_4574: 12942 - K12184 VPS28 ESCRT-I complex subunit VPS28, at 499,044 to 500,144 12942 mRNA_4575: 12943 - HMMPfam-ICE2-PF08426, at 500,416 to 502,164 12943 mRNA_4576: 12944 - K00787 FDPS farnesyl diphosphate synthase, at 502,452 to 503,977 12944

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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499,794 - 12942 mRNA_4574 0.68 +1.4
499,815 - 12942 mRNA_4574 0.70 +0.7
500,103 - +0.5
500,248 - +0.7
500,397 - +0.5
500,400 + +0.1
500,402 + +0.4
500,455 + +1.4
500,541 + +0.5
500,695 - 12943 mRNA_4575 0.16 +0.1
500,866 + 12943 mRNA_4575 0.26 +0.2
501,991 - +1.0
502,143 + +0.1
502,149 + +2.4
502,288 - +0.5
502,297 - -0.3
502,310 + -0.3

Or see this region's nucleotide sequence