Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4611

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12978 and 12979 are separated by 325 nucleotides mRNA_4610: 12978 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 578,505 to 580,784 12978 mRNA_4611: 12979 - K07652 vicK two-component system, OmpR family, sensor histidine kinase VicK, at 581,110 to 587,880 12979

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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580,383 + 12978 mRNA_4610 0.82 -0.5
580,939 + -0.1
581,229 - -0.4
581,556 + +1.0
581,813 - 12979 mRNA_4611 0.10 -0.4
582,440 + 12979 mRNA_4611 0.20 +0.1
582,440 + 12979 mRNA_4611 0.20 +1.0
583,201 - 12979 mRNA_4611 0.31 -0.8
583,212 - 12979 mRNA_4611 0.31 +1.6
583,743 + 12979 mRNA_4611 0.39 -0.2
583,903 - 12979 mRNA_4611 0.41 +0.2
583,937 + 12979 mRNA_4611 0.42 +1.1
584,034 - 12979 mRNA_4611 0.43 +0.7
584,982 + 12979 mRNA_4611 0.57 +0.2
585,009 + 12979 mRNA_4611 0.58 +0.6
585,175 + 12979 mRNA_4611 0.60 +1.2
585,542 - 12979 mRNA_4611 0.65 -1.0
585,561 + 12979 mRNA_4611 0.66 +0.8
585,627 - 12979 mRNA_4611 0.67 -0.1
586,045 - 12979 mRNA_4611 0.73 +0.6
586,051 + 12979 mRNA_4611 0.73 +0.1
586,166 - 12979 mRNA_4611 0.75 +0.1
586,626 - 12979 mRNA_4611 0.81 +0.3
586,709 + 12979 mRNA_4611 0.83 -0.0
586,743 - 12979 mRNA_4611 0.83 -0.1
587,186 - 12979 mRNA_4611 0.90 +0.2
587,331 + +0.1
587,640 - +0.8
587,930 - +0.2
588,066 - +0.8
588,070 - +1.4
588,076 - -0.6
588,098 - +0.7
588,174 - -0.7
588,176 + +0.0
588,195 - +0.7
588,250 - -0.2
588,258 - +0.3
588,259 - -1.3
588,285 + +0.5
588,311 + +0.5
588,318 + +0.7
588,320 - +0.9
588,330 - +1.0
588,330 + +1.5
588,347 - +1.4
588,366 - +0.1
588,384 + +0.3
588,385 - +1.2
588,389 + -1.4
588,392 - -0.3
588,402 + +0.1
588,408 + +0.3
588,416 - +0.3
588,421 + -0.1
588,424 - +1.7
588,487 + +1.0
588,538 - +0.1
588,540 - +0.5
588,543 + -1.2
588,545 + +0.4
588,546 + -0.2
588,607 - -0.3
588,609 - +0.9
588,610 + -0.1
588,708 - -0.2
588,712 - +0.5
588,715 + -0.4
588,717 + +2.0
588,767 - -0.7
588,779 - +0.0
588,839 - +0.2
588,857 - +0.2
588,865 + +0.1

Or see this region's nucleotide sequence