Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4636

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13003 and 13004 are separated by 167 nucleotides13004 and 13005 are separated by 440 nucleotides mRNA_4635: 13003 - Hypothetical Protein, at 659,514 to 660,743 13003 mRNA_4636: 13004 - BLAST fungal specific transcription protein, putative [Rhiz..., at 660,911 to 661,323 13004 mRNA_4637: 13005 - Hypothetical Protein, at 661,764 to 663,098 13005

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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659,958 + 13003 mRNA_4635 0.36 -0.3
659,990 + 13003 mRNA_4635 0.39 +0.6
660,247 - 13003 mRNA_4635 0.60 +1.0
660,379 + 13003 mRNA_4635 0.70 +0.7
660,390 - 13003 mRNA_4635 0.71 -0.0
660,395 + 13003 mRNA_4635 0.72 +0.1
660,553 - 13003 mRNA_4635 0.84 +0.4
660,555 - 13003 mRNA_4635 0.85 +0.4
660,706 + +0.7
660,834 + +0.5
660,858 + +0.7
660,860 - +0.2
660,868 + +0.7
661,148 - 13004 mRNA_4636 0.57 -0.3
661,164 - 13004 mRNA_4636 0.61 -0.0
661,167 + 13004 mRNA_4636 0.62 +0.2
661,170 + 13004 mRNA_4636 0.63 +0.4
661,297 - -0.2
661,713 - +0.3
661,728 - +0.4
661,729 - -0.1
661,999 + 13005 mRNA_4637 0.18 +0.3
662,018 + 13005 mRNA_4637 0.19 -0.2
662,021 - 13005 mRNA_4637 0.19 -0.5
662,271 - 13005 mRNA_4637 0.38 -0.3
662,272 + 13005 mRNA_4637 0.38 -0.1

Or see this region's nucleotide sequence