Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4638

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13005 and 13006 are separated by 93 nucleotides13006 and 13007 are separated by 130 nucleotides mRNA_4637: 13005 - Hypothetical Protein, at 661,764 to 663,098 13005 mRNA_4638: 13006 - HMMPfam-GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p-PF13839,SUPERFAMILY--SSF52266, at 663,192 to 664,874 13006 mRNA_4639: 13007 - KOG3469 Cytochrome c oxidase, subunit VIa/COX13, at 665,005 to 666,466 13007

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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662,271 - 13005 mRNA_4637 0.38 -0.3
662,272 + 13005 mRNA_4637 0.38 -0.1
662,540 - 13005 mRNA_4637 0.58 -1.7
662,715 - 13005 mRNA_4637 0.71 +2.4
662,731 - 13005 mRNA_4637 0.72 +0.3
662,924 + 13005 mRNA_4637 0.87 +0.6
663,169 + -0.0
663,519 - 13006 mRNA_4638 0.19 +0.6
663,745 + 13006 mRNA_4638 0.33 +0.5
663,787 + 13006 mRNA_4638 0.35 -0.1
664,058 + 13006 mRNA_4638 0.51 -0.2
664,311 + 13006 mRNA_4638 0.66 +2.2
664,505 - 13006 mRNA_4638 0.78 +0.8
664,527 - 13006 mRNA_4638 0.79 -0.1
664,637 - 13006 mRNA_4638 0.86 +0.5
664,641 + 13006 mRNA_4638 0.86 +1.2
664,647 - 13006 mRNA_4638 0.86 +1.0
664,805 - +1.7
664,816 + -0.7
664,826 + +0.5
664,898 - +0.4
664,932 - +0.6
664,949 - +0.2
664,974 - +0.0
665,006 + +0.6
665,069 - -0.2
665,091 - +0.2
665,333 + 13007 mRNA_4639 0.22 +0.9
665,367 - 13007 mRNA_4639 0.25 +0.8
665,371 - 13007 mRNA_4639 0.25 -0.0
665,394 - 13007 mRNA_4639 0.27 +0.2
665,405 - 13007 mRNA_4639 0.27 +0.1
665,409 + 13007 mRNA_4639 0.28 +0.3
665,559 + 13007 mRNA_4639 0.38 +0.6
665,845 - 13007 mRNA_4639 0.57 -0.1

Or see this region's nucleotide sequence