Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4652

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13019 and 13020 are separated by 58 nucleotides mRNA_4651: 13019 - Hypothetical Protein, at 696,005 to 696,627 13019 mRNA_4652: 13020 - Hypothetical Protein, at 696,686 to 697,396 13020

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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696,032 - +1.1
696,044 - +0.3
696,301 + 13019 mRNA_4651 0.48 +0.5
696,711 - +0.3
696,747 - +1.4
696,760 - 13020 mRNA_4652 0.10 +1.6
696,770 + 13020 mRNA_4652 0.12 +1.2
696,903 + 13020 mRNA_4652 0.31 +0.4
697,142 - 13020 mRNA_4652 0.64 +0.4
697,198 + 13020 mRNA_4652 0.72 +0.1
697,330 + +1.3
697,458 - +1.6
697,620 + -0.0
697,623 - -0.0
697,658 + +1.5
697,664 + +0.6
697,751 - -0.5
697,766 - -1.3
697,792 + +0.2
697,936 + +0.4
697,941 - +1.0
697,948 - +1.0
698,086 - +0.4
698,105 + +0.5
698,251 - +0.2
698,285 + -0.4
698,353 + +0.3
698,362 + +0.3
698,391 + +0.9

Or see this region's nucleotide sequence