Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4654

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13021 and 13022 are separated by 149 nucleotides13022 and 13023 are separated by 221 nucleotides mRNA_4653: 13021 - KOG1203 Predicted dehydrogenase, at 698,534 to 699,580 13021 mRNA_4654: 13022 - KOG4253 Tryptophan-rich basic nuclear protein, at 699,730 to 700,546 13022 mRNA_4655: 13023 - K03124 TFIIB, GTF2B, SUA7, tfb transcription initiation factor TFIIB, at 700,768 to 702,328 13023

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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698,835 + 13021 mRNA_4653 0.29 +0.5
698,874 - 13021 mRNA_4653 0.32 +0.0
699,016 + 13021 mRNA_4653 0.46 -0.0
699,223 + 13021 mRNA_4653 0.66 +0.2
699,283 - 13021 mRNA_4653 0.72 +0.3
699,286 - 13021 mRNA_4653 0.72 +0.0
699,456 + 13021 mRNA_4653 0.88 -0.0
699,557 + -0.3
699,616 - -0.0
699,630 + +0.2
699,666 + +1.2
699,745 - -0.0
700,148 + 13022 mRNA_4654 0.51 +1.4
700,165 - 13022 mRNA_4654 0.53 +1.1
700,419 - 13022 mRNA_4654 0.84 +0.3
700,600 - -1.0
700,605 + +0.8

Or see this region's nucleotide sequence