Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4686

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13053 and 13054 are separated by 103 nucleotides13054 and 13055 are separated by 415 nucleotides mRNA_4685: 13053 - K18192 ATP10 mitochondrial ATPase complex subunit ATP10, at 769,680 to 770,905 13053 mRNA_4686: 13054 - HMMPfam-COMPASS (Complex proteins associated with Set1p) component shg1-PF05205, at 771,009 to 771,893 13054 mRNA_4687: 13055 - BLAST Autophagy-related protein 11 [Termitomyces sp. J132], at 772,309 to 775,320 13055

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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770,946 - +0.4
770,953 + -0.2
770,961 - +0.4
771,381 + 13054 mRNA_4686 0.42 +0.2
771,847 - -0.1
772,092 - -0.1
772,099 - -0.4
772,104 + +0.8
772,258 + +0.6
772,275 + +0.4
772,281 + +0.3
772,418 - +1.1
772,421 - -0.2
772,526 - +0.5

Or see this region's nucleotide sequence