Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4687

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13054 and 13055 are separated by 415 nucleotides mRNA_4686: 13054 - HMMPfam-COMPASS (Complex proteins associated with Set1p) component shg1-PF05205, at 771,009 to 771,893 13054 mRNA_4687: 13055 - BLAST Autophagy-related protein 11 [Termitomyces sp. J132], at 772,309 to 775,320 13055

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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771,381 + 13054 mRNA_4686 0.42 +0.2
771,847 - -0.1
772,092 - -0.1
772,099 - -0.4
772,104 + +0.8
772,258 + +0.6
772,275 + +0.4
772,281 + +0.3
772,418 - +1.1
772,421 - -0.2
772,526 - +0.5
773,032 + 13055 mRNA_4687 0.24 +1.7
773,283 + 13055 mRNA_4687 0.32 -0.6
773,989 + 13055 mRNA_4687 0.56 -0.1
774,654 - 13055 mRNA_4687 0.78 +1.1
774,660 + 13055 mRNA_4687 0.78 +1.5
775,034 + +0.4
775,542 - -0.2
775,663 + +0.1
775,746 - +0.1
775,884 - +0.6
776,222 + +1.1

Or see this region's nucleotide sequence