Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4709

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13076 and 13077 are separated by 340 nucleotides13077 and 13078 are separated by 704 nucleotides mRNA_4708: 13076 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 819,652 to 821,476 13076 mRNA_4709: 13077 - Hypothetical Protein, at 821,817 to 823,479 13077 mRNA_4710: 13078 - BLAST putative mannoprotein [Rhizoctonia solani 123E], at 824,184 to 826,218 13078

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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821,212 + 13076 mRNA_4708 0.85 -1.1
821,364 + -0.2
821,450 - +0.3
822,080 - 13077 mRNA_4709 0.16 +0.2
822,199 - 13077 mRNA_4709 0.23 +0.1
822,252 - 13077 mRNA_4709 0.26 +0.5
822,303 - 13077 mRNA_4709 0.29 +0.2
822,796 - 13077 mRNA_4709 0.59 +1.1
822,813 + 13077 mRNA_4709 0.60 +0.2
823,638 + +0.3
823,808 + +0.4
823,873 + -0.1
823,886 - +0.5
823,888 + +0.1
823,932 + +0.4
823,968 + +1.1
823,975 - -0.0
823,976 + +0.1
824,075 - +0.9
824,094 + -0.3
824,103 + -1.1
824,107 - +1.5
824,108 - +0.1
824,124 - +0.6
824,134 + -0.3
824,143 + -0.2
824,274 + +1.4
824,420 - 13078 mRNA_4710 0.12 -0.1

Or see this region's nucleotide sequence