Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4714

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13081 and 13082 are separated by 124 nucleotides13082 and 13083 are separated by 115 nucleotides mRNA_4713: 13081 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 834,390 to 838,234 13081 mRNA_4714: 13082 - K01183 E3.2.1.14 chitinase, at 838,359 to 840,435 13082 mRNA_4715: 13083 - KOG1730 Thioredoxin-like protein, at 840,551 to 841,550 13083

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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837,443 + 13081 mRNA_4713 0.79 -0.5
837,482 + 13081 mRNA_4713 0.80 +1.1
837,544 + 13081 mRNA_4713 0.82 +0.5
838,426 + +0.3
838,586 + 13082 mRNA_4714 0.11 +0.7
838,619 + 13082 mRNA_4714 0.13 -0.5
838,662 + 13082 mRNA_4714 0.15 +1.5
839,432 + 13082 mRNA_4714 0.52 +0.9
839,580 + 13082 mRNA_4714 0.59 +0.1
839,619 + 13082 mRNA_4714 0.61 +0.2
839,768 + 13082 mRNA_4714 0.68 +1.0
839,872 - 13082 mRNA_4714 0.73 +0.3
839,881 + 13082 mRNA_4714 0.73 -0.0
840,191 - 13082 mRNA_4714 0.88 +0.2
840,481 - +0.9
840,511 - +0.7
840,650 + -0.2
840,780 + 13083 mRNA_4715 0.23 +0.2
841,057 + 13083 mRNA_4715 0.51 +0.3
841,060 + 13083 mRNA_4715 0.51 +0.5
841,237 + 13083 mRNA_4715 0.69 +0.7
841,369 - 13083 mRNA_4715 0.82 +0.3
841,376 + 13083 mRNA_4715 0.82 +1.1

Or see this region's nucleotide sequence