Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4723

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13090 and 13091 are separated by 244 nucleotides13091 and 13092 are separated by 220 nucleotides mRNA_4722: 13090 - K01027 OXCT 3-oxoacid CoA-transferase, at 858,449 to 860,854 13090 mRNA_4723: 13091 - Hypothetical Protein, at 861,099 to 862,312 13091 mRNA_4724: 13092 - Hypothetical Protein, at 862,533 to 863,753 13092

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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860,167 - 13090 mRNA_4722 0.71 -0.5
860,307 - 13090 mRNA_4722 0.77 +0.2
860,307 - 13090 mRNA_4722 0.77 -0.5
860,617 - +0.5
860,722 - +0.1
860,739 - -0.1
860,753 + +0.6
860,756 - +2.3
860,764 + +0.6
860,784 - +1.1
860,903 + +0.4
860,913 + +0.0
860,917 - +2.0
860,917 + +0.0
860,922 - +1.6
860,925 + +0.5
860,947 + +0.4
861,499 + 13091 mRNA_4723 0.33 -0.2
862,525 - +0.9
862,548 + +0.3
862,650 - -0.3
862,687 + 13092 mRNA_4724 0.13 -0.8
862,991 + 13092 mRNA_4724 0.38 +0.5

Or see this region's nucleotide sequence