Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4742

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13109 and 13110 are separated by 278 nucleotides mRNA_4741: 13109 - KOG2208 Vigilin, at 896,784 to 901,112 13109 mRNA_4742: 13110 - SUPERFAMILY--SSF52047, at 901,391 to 902,457 13110

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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900,428 + 13109 mRNA_4741 0.84 -0.3
900,595 - 13109 mRNA_4741 0.88 +0.2
900,670 + 13109 mRNA_4741 0.90 +0.2
900,834 - +0.3
900,885 - -0.4
900,892 + +0.4
900,967 - -0.4
901,042 + +1.5
901,180 + +0.9
901,282 - -0.4
901,357 + +0.1
901,862 - 13110 mRNA_4742 0.44 +1.4
901,928 + 13110 mRNA_4742 0.50 +0.6
901,930 - 13110 mRNA_4742 0.51 +0.5
902,195 + 13110 mRNA_4742 0.75 +0.8
902,269 - 13110 mRNA_4742 0.82 +0.9
902,406 + +1.0
902,721 - +0.9
902,881 - +0.4
903,021 + -0.0
903,142 - +0.6
903,280 - +0.3
903,340 + -0.3
903,354 - +0.2
903,383 + +0.4
903,397 + +0.3
903,401 - +0.7
903,403 + +0.2

Or see this region's nucleotide sequence