Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4763

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13130 and 13131 are separated by 709 nucleotides mRNA_4762: 13130 - HMMPfam-Fungal cellulose binding domain-PF00734,ProSitePatterns-CBM1 (carbohydrate binding type-1) domain signature.-PS00562,ProSiteProfiles-CBM1 (carbohydrate binding type-1) domain profile.-PS51164,SMART-Fungal-type cellulose-binding domain-SM00236,SUPERFAMILY--SSF57180, at 946,790 to 947,960 13130 mRNA_4763: 13131 - KOG1263 Multicopper oxidases, at 948,670 to 952,404 13131

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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947,679 - 13130 mRNA_4762 0.76 +0.6
947,858 + +1.1
948,115 - +0.4
948,136 - +1.1
948,187 + +1.2
948,188 + +0.7
948,292 - +0.5
948,426 - +1.4
948,458 + +0.3
948,584 + +0.4
949,019 - +2.0
949,290 - 13131 mRNA_4763 0.17 +1.5
949,518 + 13131 mRNA_4763 0.23 -1.0
949,617 + 13131 mRNA_4763 0.25 -0.3
950,490 - 13131 mRNA_4763 0.49 +0.3
950,610 - 13131 mRNA_4763 0.52 +0.3
950,879 + 13131 mRNA_4763 0.59 +0.7
951,217 - 13131 mRNA_4763 0.68 +1.3
951,286 + 13131 mRNA_4763 0.70 -0.2
951,486 - 13131 mRNA_4763 0.75 +1.0
951,622 + 13131 mRNA_4763 0.79 -0.3
951,668 - 13131 mRNA_4763 0.80 -0.3
951,778 - 13131 mRNA_4763 0.83 +0.4
951,778 - 13131 mRNA_4763 0.83 +0.6
951,787 + 13131 mRNA_4763 0.83 +0.1
951,787 + 13131 mRNA_4763 0.83 +0.3
951,789 - 13131 mRNA_4763 0.84 +0.6
951,869 - 13131 mRNA_4763 0.86 +0.3
952,179 + -0.1
952,321 - -0.3
952,349 + +0.1
952,610 - +0.8
952,796 + -0.0
952,805 + +1.5
952,806 - +0.0
952,932 + +0.1
952,932 + +0.4
953,090 + +0.2
953,094 + -1.9
953,117 - +0.7
953,225 + -0.3
953,358 + -0.9
953,360 + +1.0
953,366 + +0.9
953,402 + +0.9

Or see this region's nucleotide sequence