Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4806

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13174 and 13175 are separated by 326 nucleotides mRNA_4806: 13174 - Hypothetical Protein, at 1,057,204 to 1,058,778 13174 mRNA_4807: 13175 - K03119 tauD taurine dioxygenase, at 1,059,105 to 1,060,772 13175

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,056,348 + -0.5
1,056,491 + +0.1
1,056,638 - +0.2
1,056,787 + +0.4
1,056,797 + +0.6
1,056,803 + +1.9
1,056,901 - +0.4
1,057,067 + +0.3
1,057,089 + -0.5
1,057,100 - -0.3
1,057,113 - -1.3
1,057,368 + 13174 mRNA_4806 0.10 -0.7
1,057,381 + 13174 mRNA_4806 0.11 +0.3
1,057,398 + 13174 mRNA_4806 0.12 -1.0
1,057,806 - 13174 mRNA_4806 0.38 +0.2
1,057,929 - 13174 mRNA_4806 0.46 +1.2
1,057,972 - 13174 mRNA_4806 0.49 +0.1
1,058,221 + 13174 mRNA_4806 0.65 +0.2
1,058,237 - 13174 mRNA_4806 0.66 +1.7
1,058,663 - -0.3
1,058,866 - +0.6
1,058,996 - -0.8

Or see this region's nucleotide sequence