Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4829

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13196 and 13197 are separated by 287 nucleotides13197 and 13198 are separated by 199 nucleotides mRNA_4828: 13196 - SUPERFAMILY--SSF52047, at 1,102,732 to 1,104,516 13196 mRNA_4829: 13197 - K01298 CPA2 carboxypeptidase A2, at 1,104,804 to 1,106,642 13197 mRNA_4830: 13198 - K03066 PSMC5, RPT6 26S proteasome regulatory subunit T6, at 1,106,842 to 1,108,313 13198

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,103,897 - 13196 mRNA_4828 0.65 +0.7
1,103,928 + 13196 mRNA_4828 0.67 +0.9
1,104,032 - 13196 mRNA_4828 0.73 +0.4
1,104,039 + 13196 mRNA_4828 0.73 -0.5
1,104,083 + 13196 mRNA_4828 0.76 +0.1
1,104,354 - +0.9
1,104,366 - +1.0
1,104,516 - -0.4
1,104,680 - +1.1
1,104,825 + +0.7
1,105,345 - 13197 mRNA_4829 0.29 -0.3
1,105,780 - 13197 mRNA_4829 0.53 +0.8
1,105,870 + 13197 mRNA_4829 0.58 +0.1
1,105,978 - 13197 mRNA_4829 0.64 +0.7
1,106,155 - 13197 mRNA_4829 0.73 -0.1
1,106,398 - 13197 mRNA_4829 0.87 +0.0
1,106,406 + 13197 mRNA_4829 0.87 +0.1
1,106,532 - +0.5
1,106,542 - +0.5
1,106,544 - +0.8
1,106,551 - +0.7

Or see this region's nucleotide sequence