Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4840

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13207 and 13208 are separated by 222 nucleotides13208 and 13209 are separated by 148 nucleotides mRNA_4839: 13207 - K20300 TRAPPC1, BET5 trafficking protein particle complex subunit 1, at 1,121,004 to 1,121,635 13207 mRNA_4840: 13208 - KOG4526 Predicted membrane protein, at 1,121,858 to 1,122,709 13208 mRNA_4841: 13209 - HMMPfam-Anaphase-promoting complex subunit 5-PF12862, at 1,122,858 to 1,125,824 13209

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,121,850 + +0.9
1,121,870 - +0.3
1,122,768 - +0.2
1,122,787 + -0.1
1,122,791 - -0.3
1,122,796 - +0.4

Or see this region's nucleotide sequence