Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4857

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13224 and 13225 are separated by 244 nucleotides13225 and 13226 are separated by 453 nucleotides mRNA_4856: 13224 - K02962 RP-S17e, RPS17 small subunit ribosomal protein S17e, at 1,158,091 to 1,158,882 13224 mRNA_4857: 13225 - Hypothetical Protein, at 1,159,127 to 1,160,011 13225 mRNA_4858: 13226 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 1,160,465 to 1,161,653 13226

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,159,174 - +1.9
1,159,205 - +0.6
1,159,232 + 13225 mRNA_4857 0.12 +1.3
1,159,239 + 13225 mRNA_4857 0.13 +0.1
1,159,246 + 13225 mRNA_4857 0.13 +0.2
1,159,352 - 13225 mRNA_4857 0.25 +0.5
1,159,364 - 13225 mRNA_4857 0.27 -0.1
1,159,369 + 13225 mRNA_4857 0.27 +1.0
1,159,378 + 13225 mRNA_4857 0.28 +0.3
1,159,381 + 13225 mRNA_4857 0.29 -0.1
1,159,399 + 13225 mRNA_4857 0.31 +0.1
1,159,403 - 13225 mRNA_4857 0.31 +0.5
1,159,403 + 13225 mRNA_4857 0.31 +0.3
1,159,407 - 13225 mRNA_4857 0.32 -0.6
1,159,505 + 13225 mRNA_4857 0.43 +0.5
1,159,527 + 13225 mRNA_4857 0.45 +0.2
1,159,533 + 13225 mRNA_4857 0.46 -1.1
1,159,671 - 13225 mRNA_4857 0.61 +1.2
1,159,680 + 13225 mRNA_4857 0.62 +0.4
1,159,693 + 13225 mRNA_4857 0.64 +0.4
1,159,700 + 13225 mRNA_4857 0.65 +1.7
1,160,426 + +0.7
1,160,580 + +1.2
1,160,737 + 13226 mRNA_4858 0.23 -1.4

Or see this region's nucleotide sequence