Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4866

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13233 and 13234 are separated by 320 nucleotides13234 and 13235 are separated by 98 nucleotides mRNA_4865: 13233 - K12860 CDC5L, CDC5, CEF1 pre-mRNA-splicing factor CDC5/CEF1, at 1,173,228 to 1,176,152 13233 mRNA_4866: 13234 - KOG2881 Predicted membrane protein, at 1,176,473 to 1,177,592 13234 mRNA_4867: 13235 - K06634 CCNH cyclin H, at 1,177,691 to 1,179,183 13235

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,176,283 - -0.4
1,176,291 - +0.7
1,176,293 - -0.6
1,176,304 - +0.1
1,176,419 - -0.1
1,176,422 + +1.7
1,176,566 - +0.3
1,177,036 + 13234 mRNA_4866 0.50 +0.3
1,177,339 + 13234 mRNA_4866 0.77 +1.0
1,177,499 - +1.4
1,177,630 + -1.0
1,177,737 - +0.5

Or see this region's nucleotide sequence