Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4955

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13322 and 13323 are separated by 748 nucleotides13323 and 13324 are separated by 305 nucleotides mRNA_4954: 13322 - Hypothetical Protein, at 1,391,510 to 1,392,423 13322 mRNA_4955: 13323 - K20306 TRAPPC9, TRS120 trafficking protein particle complex subunit 9, at 1,393,172 to 1,398,147 13323 mRNA_4956: 13324 - HMMPfam-SMI1 / KNR4 family (SUKH-1)-PF09346, at 1,398,453 to 1,400,732 13324

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,392,173 + 13322 mRNA_4954 0.73 -0.2
1,392,254 + 13322 mRNA_4954 0.81 +0.4
1,392,260 + 13322 mRNA_4954 0.82 -0.4
1,392,261 + 13322 mRNA_4954 0.82 +1.4
1,392,267 - 13322 mRNA_4954 0.83 +2.7
1,392,308 + 13322 mRNA_4954 0.87 -0.6
1,392,309 - 13322 mRNA_4954 0.87 +0.7
1,392,336 + -0.0
1,392,359 - +0.5
1,392,423 - +0.8
1,392,436 - -0.9
1,392,472 - +2.1
1,392,474 + +0.4
1,392,476 - +0.2
1,392,477 + +0.1
1,392,480 - -0.9
1,392,484 + +0.3
1,392,494 + -0.6
1,392,497 - +0.2
1,392,508 - +0.3
1,392,516 + +1.4
1,392,653 + +0.1
1,392,783 - +0.1
1,392,921 + +1.6
1,392,940 + -1.0
1,393,074 + +0.3
1,394,233 - 13323 mRNA_4955 0.21 +0.4
1,395,137 + 13323 mRNA_4955 0.39 -1.3
1,398,251 - +0.3
1,398,383 + -1.3
1,398,564 - +0.4
1,398,567 + -0.6

Or see this region's nucleotide sequence