Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4987

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13354 and 13355 are separated by 503 nucleotides13355 and 13356 are separated by 507 nucleotides mRNA_4986: 13354 - K17943 PUM pumilio RNA-binding family, at 1,478,894 to 1,482,308 13354 mRNA_4987: 13355 - Hypothetical Protein, at 1,482,812 to 1,483,516 13355 mRNA_4988: 13356 - KOG1014 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3, at 1,484,024 to 1,484,924 13356

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,481,880 - 13354 mRNA_4986 0.87 +0.0
1,482,071 - +0.9
1,482,205 - -0.8
1,482,207 + +0.8
1,482,234 - +0.1
1,482,366 + +1.6
1,482,393 + -0.1
1,482,496 - +0.1
1,482,497 + -1.0
1,482,549 - +0.7
1,482,551 - +1.3
1,482,691 + +0.4
1,482,785 + +0.4
1,482,801 - +1.5
1,482,803 + +0.0
1,482,807 + +1.2
1,482,821 + +0.1
1,482,948 + 13355 mRNA_4987 0.19 +1.9
1,482,969 + 13355 mRNA_4987 0.22 +0.6
1,482,969 + 13355 mRNA_4987 0.22 +0.3
1,483,004 + 13355 mRNA_4987 0.27 +0.1
1,483,114 + 13355 mRNA_4987 0.43 +0.7
1,483,116 - 13355 mRNA_4987 0.43 +1.2
1,483,117 + 13355 mRNA_4987 0.43 -0.1
1,483,122 - 13355 mRNA_4987 0.44 -0.6
1,483,127 + 13355 mRNA_4987 0.45 +0.0
1,483,131 + 13355 mRNA_4987 0.45 +0.0
1,483,132 + 13355 mRNA_4987 0.45 +0.1
1,483,142 + 13355 mRNA_4987 0.47 +0.4
1,483,146 + 13355 mRNA_4987 0.47 -0.2
1,483,155 - 13355 mRNA_4987 0.49 +1.1
1,483,162 - 13355 mRNA_4987 0.50 +0.5
1,483,194 - 13355 mRNA_4987 0.54 +0.5
1,483,197 - 13355 mRNA_4987 0.55 -0.6
1,483,259 + 13355 mRNA_4987 0.63 +0.8
1,483,319 + 13355 mRNA_4987 0.72 -0.9
1,483,320 + 13355 mRNA_4987 0.72 +0.2
1,483,335 + 13355 mRNA_4987 0.74 -0.2
1,483,346 + 13355 mRNA_4987 0.76 +0.8
1,483,377 + 13355 mRNA_4987 0.80 +0.6
1,483,381 - 13355 mRNA_4987 0.81 +0.6
1,483,403 + 13355 mRNA_4987 0.84 -0.3
1,483,410 - 13355 mRNA_4987 0.85 +0.5
1,483,417 + 13355 mRNA_4987 0.86 -0.1
1,483,423 - 13355 mRNA_4987 0.87 -0.7
1,483,477 + +1.2
1,483,505 - +0.2
1,483,507 - -0.2
1,483,507 - +0.9
1,483,516 - +0.2
1,483,520 + +0.2
1,483,529 - +1.0
1,483,533 + +0.6
1,483,538 - +1.6
1,483,548 - -0.4
1,483,556 + +0.2
1,483,563 - +0.4
1,483,570 + -0.5
1,483,571 - +0.5
1,483,572 + +0.6
1,483,629 - -0.6
1,483,646 - +0.4
1,483,686 - +0.2
1,483,699 - +1.1
1,483,710 - +0.0
1,483,720 - +1.0
1,483,721 + +2.0
1,483,726 - +0.6
1,483,733 + +0.4
1,483,746 + +0.2
1,483,750 - -0.1
1,483,757 - +1.6
1,483,761 - +1.0
1,483,763 - -1.2
1,483,775 - +1.1
1,483,775 - -0.2
1,483,783 - +0.4
1,483,804 - +1.4
1,483,810 + -1.3
1,483,821 - +0.2
1,483,834 - +0.2
1,483,839 - +1.4
1,483,840 + +0.9
1,483,843 + +0.1
1,483,852 - +0.8
1,483,858 + -0.5
1,483,864 - -0.9
1,483,877 - +0.7
1,483,897 + +1.3
1,484,155 - 13356 mRNA_4988 0.15 -0.5
1,484,318 - 13356 mRNA_4988 0.33 +0.6
1,484,330 + 13356 mRNA_4988 0.34 -0.3
1,484,333 + 13356 mRNA_4988 0.34 +1.8

Or see this region's nucleotide sequence