Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4992

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13359 and 13360 are separated by 955 nucleotides13360 and 13361 are separated by 197 nucleotides mRNA_4991: 13359 - Hypothetical Protein, at 1,488,535 to 1,491,302 13359 mRNA_4992: 13360 - Hypothetical Protein, at 1,492,258 to 1,494,685 13360 mRNA_4993: 13361 - K20660 CYP709 cytochrome P450, family 709, at 1,494,883 to 1,497,041 13361

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,491,380 + +0.5
1,491,496 + -0.1
1,491,509 - +1.0
1,491,545 - +1.5
1,491,660 - -0.5
1,491,819 + +0.4
1,491,832 + +0.1
1,491,852 + -0.2
1,491,943 + -1.5
1,492,410 - -0.6
1,492,449 + +1.1
1,492,679 - 13360 mRNA_4992 0.17 +0.0
1,492,681 + 13360 mRNA_4992 0.17 +1.1
1,492,688 + 13360 mRNA_4992 0.18 +0.3
1,492,849 - 13360 mRNA_4992 0.24 +1.3
1,493,288 + 13360 mRNA_4992 0.42 +0.5
1,494,150 - 13360 mRNA_4992 0.78 +0.6
1,494,766 + +0.1

Or see this region's nucleotide sequence