Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5032

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13399 and 13400 are separated by 502 nucleotides13400 and 13401 are separated by 893 nucleotides mRNA_5031: 13399 - HMMPfam-PAS fold-PF00989,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,ProSiteProfiles-PAS repeat profile.-PS50112,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF55785, at 1,595,047 to 1,597,304 13399 mRNA_5032: 13400 - Hypothetical Protein, at 1,597,807 to 1,600,574 13400 mRNA_5033: 13401 - KOG4436 Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains), at 1,601,468 to 1,605,781 13401

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,597,323 - +0.8
1,597,410 - +0.5
1,597,413 + -0.3
1,597,440 + -0.5
1,597,442 + -0.3
1,597,512 - +2.4
1,597,520 - +0.4
1,597,524 - +0.7
1,597,542 - -0.5
1,597,555 + +1.1
1,597,559 - +0.9
1,597,563 - +0.4
1,597,564 + +0.3
1,597,573 - +0.2
1,597,599 - +0.4
1,597,639 - +0.6
1,598,013 + +0.6
1,598,284 - 13400 mRNA_5032 0.17 -0.7
1,599,634 - 13400 mRNA_5032 0.66 +0.8
1,599,656 - 13400 mRNA_5032 0.67 +1.0
1,599,774 + 13400 mRNA_5032 0.71 +0.2
1,600,300 + -0.9
1,600,348 + -0.4
1,600,439 - -1.7
1,600,505 + +0.3
1,600,589 - -0.7
1,600,620 - +0.4
1,600,799 + +0.1
1,600,807 + +0.1
1,600,823 - +0.0
1,600,833 - +1.6
1,600,838 + +0.9
1,600,838 + +0.6
1,600,896 - +0.4
1,600,899 + +0.7
1,600,907 - -0.3
1,600,941 + -0.1
1,600,956 + +1.8
1,601,105 + +0.6
1,601,238 - -0.5
1,601,238 - +0.9
1,601,241 + -0.5
1,601,244 + +0.4

Or see this region's nucleotide sequence