Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5054

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13421 and 13422 are separated by 575 nucleotides13422 and 13423 are separated by 559 nucleotides mRNA_5053: 13421 - Hypothetical Protein, at 1,638,974 to 1,640,272 13421 mRNA_5054: 13422 - Hypothetical Protein, at 1,640,848 to 1,641,700 13422 mRNA_5055: 13423 - KOG1289 Amino acid transporters, at 1,642,260 to 1,644,737 13423

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,640,010 + 13421 mRNA_5053 0.80 +0.3
1,640,010 - 13421 mRNA_5053 0.80 +1.0
1,640,260 - +0.6
1,641,041 + 13422 mRNA_5054 0.23 +0.8
1,641,199 + 13422 mRNA_5054 0.41 +1.5
1,641,530 - 13422 mRNA_5054 0.80 -0.3
1,641,625 - +0.2
1,641,785 + +0.5
1,641,844 - +0.4
1,642,208 + -0.2
1,642,254 + +0.3
1,642,264 - +0.2
1,642,535 + 13423 mRNA_5055 0.11 +0.3
1,642,566 - 13423 mRNA_5055 0.12 +0.4

Or see this region's nucleotide sequence