Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5081

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13448 and 13449 are separated by 204 nucleotides13449 and 13450 are separated by 706 nucleotides mRNA_5080: 13448 - K12486 SMAP stromal membrane-associated protein, at 1,699,891 to 1,701,497 13448 mRNA_5081: 13449 - K10396 KIF5 kinesin family member 5, at 1,701,702 to 1,705,465 13449 mRNA_5082: 13450 - K10696 BRE1 E3 ubiquitin-protein ligase BRE1, at 1,706,172 to 1,709,244 13450

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,700,944 - 13448 mRNA_5080 0.66 -0.4
1,701,461 - +0.6
1,701,716 - +1.0
1,701,765 - +1.4
1,702,619 + 13449 mRNA_5081 0.24 +0.8
1,703,038 - 13449 mRNA_5081 0.35 -0.3
1,703,168 - 13449 mRNA_5081 0.39 +0.3
1,703,345 - 13449 mRNA_5081 0.44 -2.1
1,703,346 - 13449 mRNA_5081 0.44 +0.5
1,703,363 + 13449 mRNA_5081 0.44 +0.9
1,704,056 + 13449 mRNA_5081 0.63 -0.4
1,704,206 + 13449 mRNA_5081 0.67 +1.1
1,705,373 + +1.6
1,705,512 - -0.6
1,705,646 - +0.7
1,705,653 + +0.3
1,705,656 - -0.0
1,705,795 + +0.7
1,705,807 + -0.0
1,705,811 - -0.6
1,705,812 - +0.6
1,706,081 - +0.6
1,706,085 + +1.9
1,706,235 - +0.6
1,706,383 + +1.3

Or see this region's nucleotide sequence