Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5114

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13481 and 13482 are separated by 296 nucleotides13482 and 13483 are separated by 233 nucleotides mRNA_5113: 13481 - KOG1441 Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter, at 1,790,851 to 1,792,363 13481 mRNA_5114: 13482 - K14820 BRX1, BRIX1 ribosome biogenesis protein BRX1, at 1,792,660 to 1,793,898 13482 mRNA_5115: 13483 - Hypothetical Protein, at 1,794,132 to 1,795,760 13483

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,791,799 + 13481 mRNA_5113 0.63 +0.2
1,791,839 + 13481 mRNA_5113 0.65 +0.2
1,791,976 - 13481 mRNA_5113 0.74 -0.3
1,792,077 - 13481 mRNA_5113 0.81 +0.4
1,792,107 + 13481 mRNA_5113 0.83 +0.3
1,792,251 - +2.7
1,792,554 - -0.3
1,792,554 - -0.9
1,792,574 - -0.2
1,793,849 - -0.3
1,794,356 - 13483 mRNA_5115 0.14 +0.6
1,794,474 + 13483 mRNA_5115 0.21 -0.5
1,794,737 - 13483 mRNA_5115 0.37 +0.2

Or see this region's nucleotide sequence