Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5176

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13543 and 13544 are separated by 902 nucleotides13544 and 13545 are separated by 325 nucleotides mRNA_5175: 13543 - K08341 GABARAP, ATG8, LC3 GABA(A) receptor-associated protein, at 78,484 to 79,264 13543 mRNA_5176: 13544 - Hypothetical Protein, at 80,167 to 80,892 13544 mRNA_5177: 13545 - K07874 RAB1A Ras-related protein Rab-1A, at 81,218 to 82,188 13545

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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79,200 - +0.2
79,314 - +0.9
79,426 - -0.4
79,587 - +0.3
79,703 + -0.1
79,758 + +0.7
79,882 - -0.8
79,999 + +0.0
80,229 + +0.8
80,335 + 13544 mRNA_5176 0.23 -0.7
80,342 + 13544 mRNA_5176 0.24 +1.0
80,442 + 13544 mRNA_5176 0.38 +0.2
80,444 - 13544 mRNA_5176 0.38 +0.4
80,501 + 13544 mRNA_5176 0.46 -0.6
80,502 - 13544 mRNA_5176 0.46 +0.8
80,643 - 13544 mRNA_5176 0.66 +0.7
80,786 - 13544 mRNA_5176 0.85 +0.8
80,799 + 13544 mRNA_5176 0.87 +1.8
80,814 + 13544 mRNA_5176 0.89 +0.3
81,145 + +1.2
81,164 + -0.6
81,168 + -0.3

Or see this region's nucleotide sequence