Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5220

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13587 and 13588 are separated by 254 nucleotides mRNA_5219: 13587 - Hypothetical Protein, at 177,901 to 180,149 13587 mRNA_5220: 13588 - K09241 GAL4 transcriptional regulatory protein GAL4, at 180,404 to 182,796 13588

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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179,424 + 13587 mRNA_5219 0.68 +0.7
179,450 + 13587 mRNA_5219 0.69 +1.2
179,472 + 13587 mRNA_5219 0.70 +0.9
179,564 - 13587 mRNA_5219 0.74 +1.6
179,580 - 13587 mRNA_5219 0.75 -0.9
179,614 + 13587 mRNA_5219 0.76 +1.0
179,792 - 13587 mRNA_5219 0.84 +1.4
179,877 + 13587 mRNA_5219 0.88 +0.9
179,921 + 13587 mRNA_5219 0.90 -0.2
180,210 + +0.5
180,465 - +0.5
180,490 - +0.6
180,501 - +1.4
180,522 + -0.5
180,808 - 13588 mRNA_5220 0.17 +1.5
180,811 + 13588 mRNA_5220 0.17 +0.1
181,253 - 13588 mRNA_5220 0.35 -0.1
181,402 - 13588 mRNA_5220 0.42 -0.2
181,516 + 13588 mRNA_5220 0.46 +0.6
181,547 + 13588 mRNA_5220 0.48 -0.1
181,549 - 13588 mRNA_5220 0.48 +1.0
181,552 - 13588 mRNA_5220 0.48 +0.9
181,755 - 13588 mRNA_5220 0.56 +0.6
182,056 + 13588 mRNA_5220 0.69 -1.3
182,082 - 13588 mRNA_5220 0.70 -0.6
182,226 + 13588 mRNA_5220 0.76 +0.4
182,362 + 13588 mRNA_5220 0.82 +0.2
182,369 + 13588 mRNA_5220 0.82 -0.1
182,703 + +0.7
182,820 - +1.1
182,840 - -0.1
182,842 - +0.9
182,964 - +0.8
182,978 + +0.3
182,983 + +0.6
182,992 + +0.6
182,998 - +0.1
183,019 - +0.1
183,037 + +0.7
183,037 + -0.4
183,041 - -0.3
183,042 + +0.2
183,043 + -0.3
183,049 - +1.2
183,061 + +0.6
183,064 - +0.8
183,069 + -0.1
183,070 + +0.5
183,080 + -0.1
183,093 + -0.5
183,142 + +0.3
183,163 + +0.4
183,198 - +0.9
183,218 + +0.2
183,280 - +0.4
183,316 + +1.2
183,336 - -0.3
183,345 - -0.2
183,454 - +0.0
183,477 - +0.5
183,543 + +0.6
183,786 + +0.1

Or see this region's nucleotide sequence