Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5235

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13602 and 13603 are separated by 514 nucleotides13603 and 13604 are separated by 203 nucleotides mRNA_5234: 13602 - KOG0725 Reductases with broad range of substrate specificities, at 224,900 to 226,337 13602 mRNA_5235: 13603 - KOG1178 Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes, at 226,852 to 231,804 13603 mRNA_5236: 13604 - KOG2031 Tyrosyl-DNA phosphodiesterase, at 232,008 to 233,871 13604

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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226,489 - +0.4
226,506 + -0.1
226,520 - +0.7
226,544 + -0.9
226,576 + -0.4
226,578 + -1.3
226,579 - -0.8
226,656 + -0.1
226,662 - -0.2
226,666 - +0.3
226,757 - +0.4
226,767 - -0.4
226,784 - -1.9
226,785 - +0.1
226,805 - -0.2
226,913 + -1.1
227,077 + +0.7
227,103 + +0.3
227,225 + -0.3
227,388 - 13603 mRNA_5235 0.11 -0.2
227,531 + 13603 mRNA_5235 0.14 +0.4
227,558 + 13603 mRNA_5235 0.14 +0.1
227,675 - 13603 mRNA_5235 0.17 +0.1
228,241 - 13603 mRNA_5235 0.28 +0.3
228,267 + 13603 mRNA_5235 0.29 +0.8
228,288 + 13603 mRNA_5235 0.29 -0.1
228,594 + 13603 mRNA_5235 0.35 -0.2
228,673 - 13603 mRNA_5235 0.37 +0.6
229,118 + 13603 mRNA_5235 0.46 +0.5
229,147 + 13603 mRNA_5235 0.46 +1.3
229,392 - 13603 mRNA_5235 0.51 -0.9
229,730 + 13603 mRNA_5235 0.58 +0.8
229,989 + 13603 mRNA_5235 0.63 +0.8
230,309 + 13603 mRNA_5235 0.70 +0.1
230,431 - 13603 mRNA_5235 0.72 -1.0
230,569 - 13603 mRNA_5235 0.75 +0.5
231,026 + 13603 mRNA_5235 0.84 -0.2
231,028 - 13603 mRNA_5235 0.84 +0.2
231,292 + 13603 mRNA_5235 0.90 +0.2
231,329 + -0.4
231,401 + +0.4
231,730 + +1.4
231,736 + +1.4
231,862 + +0.8
231,863 + +0.9
231,869 - -1.1
231,876 - -0.6
231,894 - +0.5
232,012 - +0.2
232,185 - -0.1
232,190 + -0.8
232,200 - 13604 mRNA_5236 0.10 +0.1
232,635 - 13604 mRNA_5236 0.34 -0.7
232,646 + 13604 mRNA_5236 0.34 -0.4
232,776 - 13604 mRNA_5236 0.41 +0.5

Or see this region's nucleotide sequence