Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5265

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13632 and 13633 are separated by 454 nucleotides mRNA_5264: 13632 - Hypothetical Protein, at 310,145 to 311,167 13632 mRNA_5265: 13633 - K18749 LSM14, RAP55, SCD6 protein LSM14, at 311,622 to 313,606 13633

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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310,652 - 13632 mRNA_5264 0.50 -0.4
310,979 + 13632 mRNA_5264 0.82 -1.4
311,506 - +1.0
311,523 + +0.0
311,542 - +0.4
311,544 + +0.4
311,680 + +1.3
311,684 - +0.4
311,695 + -0.8
311,819 - +0.2
311,820 - +1.2
311,846 + 13633 mRNA_5265 0.11 +0.9
311,855 + 13633 mRNA_5265 0.12 -0.1
312,021 + 13633 mRNA_5265 0.20 +0.3
312,411 - 13633 mRNA_5265 0.40 -1.0
312,547 - 13633 mRNA_5265 0.47 +0.7
312,864 + 13633 mRNA_5265 0.63 +0.5
313,007 - 13633 mRNA_5265 0.70 -0.2
313,188 + 13633 mRNA_5265 0.79 +0.8
313,326 + 13633 mRNA_5265 0.86 +0.1
313,743 - -0.1
313,951 + -0.1
314,053 + +0.5
314,067 - -0.7
314,229 + -0.6

Or see this region's nucleotide sequence