Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5311

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13678 and 13679 are separated by 303 nucleotides13679 and 13680 are separated by 484 nucleotides mRNA_5310: 13678 - Hypothetical Protein, at 425,565 to 427,309 13678 mRNA_5311: 13679 - Hypothetical Protein, at 427,613 to 428,578 13679 mRNA_5312: 13680 - K18182 COX16 cytochrome c oxidase assembly protein subunit 16, at 429,063 to 429,953 13680

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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426,640 + 13678 mRNA_5310 0.62 +0.3
426,642 - 13678 mRNA_5310 0.62 +0.3
426,709 + 13678 mRNA_5310 0.66 +0.6
427,160 + +0.4
427,240 - -0.0
427,241 + -0.0
427,261 + +0.7
427,314 - +0.0
427,323 - +0.0
427,361 - +0.2
427,364 - -0.0
427,388 - +2.5
427,472 + +1.0
427,487 - +0.2
427,513 + +1.5
427,529 - -0.2
427,548 + -0.8
427,587 - -0.5
427,604 + +0.4
427,620 - -0.0
427,628 - +0.7
427,665 - +0.6
427,667 + -0.8
427,671 + +1.1
427,710 + 13679 mRNA_5311 0.10 +0.4
427,744 + 13679 mRNA_5311 0.14 +0.4
427,843 + 13679 mRNA_5311 0.24 +0.1
428,068 - 13679 mRNA_5311 0.47 +0.8
428,075 + 13679 mRNA_5311 0.48 +2.1
428,106 - 13679 mRNA_5311 0.51 +0.6
428,203 + 13679 mRNA_5311 0.61 +0.4
428,218 - 13679 mRNA_5311 0.63 +0.4
428,251 - 13679 mRNA_5311 0.66 -0.7
428,453 + 13679 mRNA_5311 0.87 +1.8
428,468 - 13679 mRNA_5311 0.89 +0.9
428,487 + +0.0
428,635 + +0.6
428,650 + +0.5
428,654 - -0.1
428,664 + +1.3
428,671 - +0.6
428,705 + +0.3
428,720 - +0.3
428,778 - +0.2
428,779 + +0.8
428,781 + +0.5
428,783 + -0.5
428,785 + +0.8
428,787 - -0.8
428,797 - +0.7
428,799 + +0.3
428,800 - +1.5
428,802 - +0.7
428,818 - +1.3
428,819 - +1.5
428,824 - +0.9
428,825 + -1.1
428,827 + +0.3
428,829 + +0.1
428,830 - +0.9
428,836 - -0.9
428,837 + +0.6
428,846 - -0.4
428,898 + +0.3
428,973 + +1.0
429,021 - +0.8

Or see this region's nucleotide sequence