Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5350

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13717 and 13718 are separated by 444 nucleotides13718 and 13719 are separated by 751 nucleotides mRNA_5349: 13717 - K17427 MRPL46 large subunit ribosomal protein L46, at 514,418 to 515,269 13717 mRNA_5350: 13718 - K20310 TRAPPC13 trafficking protein particle complex subunit 13, at 515,714 to 517,641 13718 mRNA_5351: 13719 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 518,393 to 520,382 13719

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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515,515 - +0.5
515,515 + -0.1
515,519 - -0.1
515,525 + -1.0
515,528 - +0.3
515,537 - +1.2
515,682 + -0.4
515,823 + +1.1
515,971 + 13718 mRNA_5350 0.13 +1.8
516,089 - 13718 mRNA_5350 0.19 +1.0
516,379 + 13718 mRNA_5350 0.34 +0.4
516,383 - 13718 mRNA_5350 0.35 +0.0
516,384 + 13718 mRNA_5350 0.35 -0.7
516,403 + 13718 mRNA_5350 0.36 -0.3
516,659 + 13718 mRNA_5350 0.49 -0.0
516,693 + 13718 mRNA_5350 0.51 -0.2
517,255 + 13718 mRNA_5350 0.80 +1.3
517,256 - 13718 mRNA_5350 0.80 -0.5
517,404 + 13718 mRNA_5350 0.88 +2.0
517,539 - +0.4
517,874 + +1.9
518,005 + -0.0
518,015 + +0.4
518,023 - -0.1
518,056 + +0.4
518,075 + +0.5
518,083 - +0.2
518,098 + -0.3
518,112 - -0.6
518,114 + -0.5
518,118 + -0.2
518,119 - +0.2
518,123 - +0.1
518,142 + +0.3
518,157 - +0.8
518,158 + -0.1
518,159 + +1.2
518,169 + +0.0
518,181 - +0.4
518,186 - +0.5
518,191 + +0.0
518,195 - -0.0
518,198 - -0.1
518,203 - +0.7
518,203 - +0.3
518,207 - -0.1
518,209 - +0.5
518,211 + +1.6
518,212 - +0.9
518,228 + +0.5
518,230 - +1.0
518,239 - -0.1
518,244 - +0.1
518,247 + -0.2
518,249 - +1.6
518,289 + +0.7
518,291 + +0.4
518,292 - +1.3
518,301 - -1.1
518,302 - +0.3
518,305 - -0.8
518,324 + +1.1
518,325 + -0.0
518,329 + +0.9
518,419 - -0.1
518,425 + +0.4
518,455 - -0.1
518,583 + -1.2

Or see this region's nucleotide sequence