Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5351

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13718 and 13719 are separated by 751 nucleotides mRNA_5350: 13718 - K20310 TRAPPC13 trafficking protein particle complex subunit 13, at 515,714 to 517,641 13718 mRNA_5351: 13719 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 518,393 to 520,382 13719

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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517,404 + 13718 mRNA_5350 0.88 +2.0
517,539 - +0.4
517,874 + +1.9
518,005 + -0.0
518,015 + +0.4
518,023 - -0.1
518,056 + +0.4
518,075 + +0.5
518,083 - +0.2
518,098 + -0.3
518,112 - -0.6
518,114 + -0.5
518,118 + -0.2
518,119 - +0.2
518,123 - +0.1
518,142 + +0.3
518,157 - +0.8
518,158 + -0.1
518,159 + +1.2
518,169 + +0.0
518,181 - +0.4
518,186 - +0.5
518,191 + +0.0
518,195 - -0.0
518,198 - -0.1
518,203 - +0.7
518,203 - +0.3
518,207 - -0.1
518,209 - +0.5
518,211 + +1.6
518,212 - +0.9
518,228 + +0.5
518,230 - +1.0
518,239 - -0.1
518,244 - +0.1
518,247 + -0.2
518,249 - +1.6
518,289 + +0.7
518,291 + +0.4
518,292 - +1.3
518,301 - -1.1
518,302 - +0.3
518,305 - -0.8
518,324 + +1.1
518,325 + -0.0
518,329 + +0.9
518,419 - -0.1
518,425 + +0.4
518,455 - -0.1
518,583 + -1.2
518,652 - 13719 mRNA_5351 0.13 -0.2
518,746 - 13719 mRNA_5351 0.18 +0.5
518,870 - 13719 mRNA_5351 0.24 -0.3
518,887 + 13719 mRNA_5351 0.25 +0.4
519,010 + 13719 mRNA_5351 0.31 -1.4
519,165 - 13719 mRNA_5351 0.39 +0.9
519,309 - 13719 mRNA_5351 0.46 +0.2
519,313 + 13719 mRNA_5351 0.46 +0.7
519,380 - 13719 mRNA_5351 0.50 +0.1
519,447 + 13719 mRNA_5351 0.53 +0.5
519,637 + 13719 mRNA_5351 0.63 +0.5
519,663 + 13719 mRNA_5351 0.64 +1.0
519,774 + 13719 mRNA_5351 0.69 -0.2
519,933 - 13719 mRNA_5351 0.77 +0.7
520,019 - 13719 mRNA_5351 0.82 +0.4
520,064 + 13719 mRNA_5351 0.84 +0.2
520,344 + +0.2
520,453 - -1.2
520,453 - -1.1
520,464 + -0.1
520,473 + -0.3
520,521 - +0.3
520,524 + +0.2
520,538 - -0.1
520,678 - +0.7
520,935 + +0.3
520,943 - +0.5
520,953 + -0.5
520,953 - +1.2
520,955 + +0.2
520,965 - +0.9
521,092 - -0.7
521,100 - +0.9
521,126 + +0.0
521,249 + +0.1
521,282 - +0.8
521,306 - +0.5
521,317 - +0.2

Or see this region's nucleotide sequence