Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5370

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13737 and 13738 are separated by 524 nucleotides13738 and 13739 are separated by 313 nucleotides mRNA_5369: 13737 - K03627 MBF1 putative transcription factor, at 557,510 to 559,067 13737 mRNA_5370: 13738 - K18443 GBF1 golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1, at 559,592 to 565,388 13738 mRNA_5371: 13739 - K03859 PIGC, GPI2 phosphatidylinositol glycan, class C, at 565,702 to 566,965 13739

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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558,692 - 13737 mRNA_5369 0.76 +1.4
558,850 - 13737 mRNA_5369 0.86 +1.7
558,855 - 13737 mRNA_5369 0.86 +1.3
558,917 + +0.0
559,330 - +0.4
560,311 - 13738 mRNA_5370 0.12 -0.3
564,355 + 13738 mRNA_5370 0.82 -0.9
564,359 - 13738 mRNA_5370 0.82 -0.8
564,928 - -0.0
565,396 - +0.2
565,548 - -0.5
565,551 - +0.5
565,561 - +0.4
565,562 - +0.8
565,565 + +0.6
565,566 - -0.8
565,572 + -0.0
565,721 - -0.1
565,744 - +1.0

Or see this region's nucleotide sequence