Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5378

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13746 and 13747 are separated by 201 nucleotides mRNA_5378: 13746 - Hypothetical Protein, at 593,091 to 593,885 13746 mRNA_5379: 13747 - K12829 SF3B2, SAP145, CUS1 splicing factor 3B subunit 2, at 594,087 to 596,220 13747

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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592,240 - -1.1
592,495 - +0.4
592,843 - +0.0
592,908 + -0.7
593,076 + +0.1
593,099 + +0.5
593,488 - 13746 mRNA_5378 0.50 +1.9
593,647 - 13746 mRNA_5378 0.70 -1.2
593,663 - 13746 mRNA_5378 0.72 +1.0
593,676 + 13746 mRNA_5378 0.74 +0.6
593,975 - +1.8

Or see this region's nucleotide sequence