Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5394

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13762 and 13763 are separated by 73 nucleotides mRNA_5394: 13762 - SUPERFAMILY--SSF54897, at 121 to 1,074 13762 mRNA_5395: 13763 - KOG4551 GPI-GlcNAc transferase complex, PIG-H component, involved in glycosylphosphatidylinositol anchor biosynthesis, at 1,148 to 1,997 13763

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1 + +2.0
1 + +0.1
1 + +0.8
1 + +1.1
23 + +1.5
29 + -0.6
29 + +0.2
34 + +0.3
39 + +0.4
39 + +0.2
47 + -0.0
50 + -0.2
50 + -1.0
50 + +0.8
50 + -0.4
50 - -0.7
51 + +1.2
61 + +0.8
62 + +0.0
96 + +0.7
116 + -0.4
158 - +0.2
159 - -0.0
160 - +0.4
169 - +0.8
180 - -1.4
189 + +0.1
198 + +1.3
201 - +0.6
208 - +0.3
210 + +0.9
225 + 13762 mRNA_5394 0.11 -1.4
225 + 13762 mRNA_5394 0.11 +0.7
244 + 13762 mRNA_5394 0.13 +1.8
245 - 13762 mRNA_5394 0.13 -0.4
271 - 13762 mRNA_5394 0.16 +0.3
276 - 13762 mRNA_5394 0.16 -0.6
277 + 13762 mRNA_5394 0.16 +2.5
280 - 13762 mRNA_5394 0.17 -0.3
306 + 13762 mRNA_5394 0.19 +0.6
317 - 13762 mRNA_5394 0.21 -0.2
345 + 13762 mRNA_5394 0.23 -0.1
345 - 13762 mRNA_5394 0.23 +0.5
347 + 13762 mRNA_5394 0.24 +0.4
359 - 13762 mRNA_5394 0.25 -0.1
387 - 13762 mRNA_5394 0.28 +0.5
399 + 13762 mRNA_5394 0.29 +0.1
434 + 13762 mRNA_5394 0.33 +1.1
447 - 13762 mRNA_5394 0.34 -0.4
485 - 13762 mRNA_5394 0.38 +1.4
543 + 13762 mRNA_5394 0.44 +0.4
649 + 13762 mRNA_5394 0.55 +0.4
667 + 13762 mRNA_5394 0.57 -0.5
667 - 13762 mRNA_5394 0.57 +1.5
678 - 13762 mRNA_5394 0.58 +0.6
718 + 13762 mRNA_5394 0.63 +0.7
723 + 13762 mRNA_5394 0.63 -0.8
802 + 13762 mRNA_5394 0.71 +1.4
806 + 13762 mRNA_5394 0.72 -0.2
905 - 13762 mRNA_5394 0.82 +0.0
911 + 13762 mRNA_5394 0.83 +0.6
965 + 13762 mRNA_5394 0.88 -0.1
966 + 13762 mRNA_5394 0.89 +0.6
968 + 13762 mRNA_5394 0.89 -1.9
1,014 - -0.8
1,084 - -0.4
1,103 - +0.3
1,110 + -0.4
1,245 - 13763 mRNA_5395 0.11 +0.2
1,260 - 13763 mRNA_5395 0.13 +0.6
1,376 - 13763 mRNA_5395 0.27 -0.2
1,438 + 13763 mRNA_5395 0.34 -0.1
1,438 + 13763 mRNA_5395 0.34 +1.4
1,438 + 13763 mRNA_5395 0.34 -0.5
1,523 + 13763 mRNA_5395 0.44 +0.0
1,528 - 13763 mRNA_5395 0.45 +0.1
1,533 + 13763 mRNA_5395 0.45 -0.3
1,538 + 13763 mRNA_5395 0.46 -0.1
1,538 - 13763 mRNA_5395 0.46 -0.5
1,556 + 13763 mRNA_5395 0.48 +2.3
1,639 + 13763 mRNA_5395 0.58 -0.0
1,854 - 13763 mRNA_5395 0.83 +1.0
1,855 - 13763 mRNA_5395 0.83 +0.9
1,887 - 13763 mRNA_5395 0.87 +0.0
1,908 - 13763 mRNA_5395 0.89 +0.5
2,000 - +1.3
2,009 + +0.4

Or see this region's nucleotide sequence